TFBS
  1. Binding Sites of AtWRKYs across the Genome.
Specificity
  1. Biochemical Specificity Models of AtWRKYs.
Jbrowse
  1. Browse the Genome-wide Occupancy Tracks of AtWRKYs.
Network
  1. Compare the Regulatory Networks with and without Methylation.
Gene Search
  1. Locate Binding Sites of AtWRKYs around the Target Gene.
Download
  1. Download the Source Data Libraries of AtWRKYs.
The Landscape of WRKY-DNA Interactions

WRKY regulatory code database

A total of 571 datasets, including SELEX, PBM, methyl-SELEX, DAP, ampDAP, methyl-ampDAP, and ChIP-seq data, were curated and analyzed to depict the TF-DNA interaction landscape of AtWRKYs both in the presence and absence of DNA methylation.
202
DAP
120
ampDAP
65
methyl-ampDAP
129
SELEX
39
methyl-SELEX
16
ChIP


How to cite us

Ma, N., Jiang, D., Li, T., Luo, L., Chen, H., Zhang, X., Mu, Z., Chen, S., Chen, P., Liu, Q., Lin, J., Wang, Q., Yin, Y., Taipale, J., Huang, J., Guo, H., & Zhu, F. (2025). The specificity landscape of WRKY transcription factors reveals the bidirectional influence of non-CG methylation. Nucleic acids research, 53(21), gkaf1168. https://doi.org/10.1093/nar/gkaf1168
Link to the paper


Links

The Arabidopsis Information Resource (TAIR) An open-access database for eukaryotic transcription factor binding profiles (JASPAR) Catalog of Inferred Sequence Binding Preferences (CIS-BP) The Plant Promoter Analysis Navigator (PlantPAN) Plant Transcription Factor Database (PlantTFDB)


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Transcriptional Systems Biology Group